# Core package of FLR, fisheries modelling in R.

## Documentation for package ‘FLCore’ version 3.0

## Help Pages

A B C D E F G H I J L M N P Q R S T U V W X Y misc

## -- --

FLCore-package | Core package of FLR, fisheries modelling in R.

## -- --

$<-,FLlst,character-method | Extract or Replace Parts of an FLR Object
+,FLStock,FLStock-method | Merging FLStock objects

## -- A --

ab2sv | Stock-Recruitment models
ac | FLCore-internal
AIC,FLModel,missing-method | Akaike information criterion (AIC) method
AIC,FLModel,numeric-method | Akaike information criterion (AIC) method
apply,ANY,missing,missing-method | Method apply
apply,FLQuant,numeric,function-method | Method apply
areaMeans | Methods to compute sums, means and vars of FLQuant objects
areaMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
areaMeans-methods | Methods to compute sums, means and vars of FLQuant objects
areaSums | Methods to compute sums, means and vars of FLQuant objects
areaSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
areaSums-methods | Methods to compute sums, means and vars of FLQuant objects
areaVars | Methods to compute sums, means and vars of FLQuant objects
areaVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
areaVars-methods | Methods to compute sums, means and vars of FLQuant objects
Arith,FLArray,FLArray-method | Arithmetic methods for FLQuant objects
Arith,FLArray,numeric-method | Arithmetic methods for FLQuant objects
Arith,FLCohort,FLCohort-method | Arithmetic methods for FLQuant objects
Arith,FLQuant,FLQuant-method | Arithmetic methods for FLQuant objects
Arith,FLQuants,FLQuants-method | Arithmetic methods for FLQuant objects
Arith,numeric,FLArray-method | Arithmetic methods for FLQuant objects
as.data.frame,FLArray,missing,missing-method | Method as.data.frame
as.data.frame,FLCatch,missing,missing-method | Method as.data.frame
as.data.frame,FLCohort,ANY,ANY-method | Method as.data.frame
as.data.frame,FLCohort,missing,missing-method | Method as.data.frame
as.data.frame,FLCohorts,missing,missing-method | Method as.data.frame
as.data.frame,FLComp,missing,missing-method | Method as.data.frame
as.data.frame,FLFleet,missing,missing-method | Method as.data.frame
as.data.frame,FLPar,ANY,ANY-method | Method as.data.frame
as.data.frame,FLQuant,missing,missing-method | Method as.data.frame
as.data.frame,FLQuants,missing,missing-method | Method as.data.frame
as.data.frame-FLCore | Method as.data.frame
as.FLBiol | Old S3 coercion methods
as.FLBiol,FLBiol-method | Old S3 coercion methods
as.FLBiol,FLStock-method | Old S3 coercion methods
as.FLBiol-methods | Old S3 coercion methods
as.FLIndex | Old S3 coercion methods
as.FLIndex,FLFleet-method | Old S3 coercion methods
as.FLIndex-methods | Old S3 coercion methods
as.FLQuant | Old S3 coercion methods
as.FLQuant,array-method | Old S3 coercion methods
as.FLQuant,data.frame-method | Old S3 coercion methods
as.FLQuant,FLQuant-method | Old S3 coercion methods
as.FLQuant,matrix-method | Old S3 coercion methods
as.FLQuant,vector-method | Old S3 coercion methods
as.FLQuant-methods | Old S3 coercion methods
as.FLSR | Old S3 coercion methods
as.FLSR,FLBiol-method | Old S3 coercion methods
as.FLSR,FLStock-method | Old S3 coercion methods
as.FLSR-methods | Old S3 coercion methods
as.FLStock | Old S3 coercion methods

## -- B --

barchart,formula,FLComp-method | Lattice plots
barchart,formula,FLQuant-method | Lattice plots
bevholt | Stock-Recruitment models
bevholt.ar1 | Stock-Recruitment models
bevholt.c.a | Stock-Recruitment models
bevholt.c.b | Stock-Recruitment models
bevholt.d | Stock-Recruitment models
bevholt.ndc | Stock-Recruitment models
Bevholt.SV | Stock-Recruitment models
bevholt.sv | Stock-Recruitment models
BIC,FLModel-method | Bayesian information criterion (BIC) method
bkey | Generate key for bubbles plot
bkey,list-method | Generate key for bubbles plot
bkey-methods | Generate key for bubbles plot
bt4 | FLCore datasets
bubbles | Bubbles plot
bubbles,formula,data.frame-method | Bubbles plot
bubbles,formula,FLCohort-method | Bubbles plot
bubbles,formula,FLQuant-method | Bubbles plot
bubbles,formula,FLQuants-method | Bubbles plot
bubbles-methods | Bubbles plot
bwplot,formula,FLComp-method | Lattice plots
bwplot,formula,FLQuant-method | Lattice plots

## -- C --

capacity | Accesor and replacement methods for complex S4 classes
capacity,FLFleet-method | Accesor and replacement methods for complex S4 classes
capacity-methods | Accesor and replacement methods for complex S4 classes
capacity<- | Accesor and replacement methods for complex S4 classes
capacity<-,FLFleet,FLQuant-method | Accesor and replacement methods for complex S4 classes
capacity<-,FLFleet,numeric-method | Accesor and replacement methods for complex S4 classes
capacity<--methods | Accesor and replacement methods for complex S4 classes
catch | Accesor and replacement methods for complex S4 classes
catch,FLCatch-method | Accesor and replacement methods for the FLCatch class
catch,FLCatches-method | Accesor and replacement methods for the FLCatch class
catch,FLFleet-method | Accesor and replacement methods for the FLCatch class
catch,FLMetier-method | Accesor and replacement methods for the FLCatch class
catch,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catch,FLStock-method | Accesor and replacement methods for complex S4 classes
catch-methods | Accesor and replacement methods for complex S4 classes
catch.n | Accesor and replacement methods for complex S4 classes
catch.n,FLBiol-method | Class FLBiol
catch.n,FLCatch-method | Accesor and replacement methods for the FLCatch class
catch.n,FLCatches-method | Accesor and replacement methods for the FLCatch class
catch.n,FLFleet-method | Accesor and replacement methods for the FLCatch class
catch.n,FLIndex-method | Accesor and replacement methods for complex S4 classes
catch.n,FLMetier-method | Accesor and replacement methods for the FLCatch class
catch.n,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catch.n,FLStock-method | Accesor and replacement methods for complex S4 classes
catch.n-methods | Accesor and replacement methods for complex S4 classes
catch.n<- | Accesor and replacement methods for complex S4 classes
catch.n<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.n<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.n<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.n<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
catch.n<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
catch.n<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.n<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.n<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
catch.n<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
catch.n<--methods | Accesor and replacement methods for complex S4 classes
catch.q | Accesor and replacement methods for complex S4 classes
catch.q,FLCatch-method | Accesor and replacement methods for the FLCatch class
catch.q,FLCatches-method | Accesor and replacement methods for the FLCatch class
catch.q,FLFleet-method | Accesor and replacement methods for the FLCatch class
catch.q,FLMetier-method | Accesor and replacement methods for the FLCatch class
catch.q,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catch.q-methods | Accesor and replacement methods for complex S4 classes
catch.q<- | Accesor and replacement methods for complex S4 classes
catch.q<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.q<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.q<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.q<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.q<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.q<--methods | Accesor and replacement methods for complex S4 classes
catch.sel | Accesor and replacement methods for complex S4 classes
catch.sel,FLCatch-method | Accesor and replacement methods for the FLCatch class
catch.sel,FLCatches-method | Accesor and replacement methods for the FLCatch class
catch.sel,FLFleet-method | Accesor and replacement methods for the FLCatch class
catch.sel,FLMetier-method | Accesor and replacement methods for the FLCatch class
catch.sel,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catch.sel-methods | Accesor and replacement methods for complex S4 classes
catch.sel<- | Accesor and replacement methods for complex S4 classes
catch.sel<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.sel<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.sel<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.sel<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.sel<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.sel<--methods | Accesor and replacement methods for complex S4 classes
catch.wt | Accesor and replacement methods for complex S4 classes
catch.wt,FLCatch-method | Accesor and replacement methods for the FLCatch class
catch.wt,FLCatches-method | Accesor and replacement methods for the FLCatch class
catch.wt,FLFleet-method | Accesor and replacement methods for the FLCatch class
catch.wt,FLIndex-method | Accesor and replacement methods for complex S4 classes
catch.wt,FLMetier-method | Accesor and replacement methods for the FLCatch class
catch.wt,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catch.wt,FLStock-method | Accesor and replacement methods for complex S4 classes
catch.wt-methods | Accesor and replacement methods for complex S4 classes
catch.wt<- | Accesor and replacement methods for complex S4 classes
catch.wt<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.wt<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.wt<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.wt<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
catch.wt<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
catch.wt<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.wt<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch.wt<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
catch.wt<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
catch.wt<--methods | Accesor and replacement methods for complex S4 classes
catch<- | Accesor and replacement methods for complex S4 classes
catch<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
catch<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
catch<-,FLStock,FLQuants-method | Accesor and replacement methods for complex S4 classes
catch<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
catch<--methods | Accesor and replacement methods for complex S4 classes
catches | Accesor and replacement methods for complex S4 classes
catches,FLFleet-method | Accesor and replacement methods for the FLCatch class
catches,FLMetier-method | Accesor and replacement methods for the FLCatch class
catches,FLMetiers-method | Accesor and replacement methods for the FLCatch class
catches-methods | Accesor and replacement methods for complex S4 classes
catches<- | Accesor and replacement methods for complex S4 classes
catches<-,FLMetier,ANY,FLCatch-method | Accesor and replacement methods for the FLCatch class
catches<-,FLMetier,ANY,FLCatches-method | Accesor and replacement methods for the FLCatch class
catches<--methods | Accesor and replacement methods for complex S4 classes
catchNames | Method catchNames
catchNames,FLCatch-method | Method catchNames
catchNames,FLCatches-method | Method catchNames
catchNames,FLFleet-method | Method catchNames
catchNames,FLFleets-method | Method catchNames
catchNames,FLMetier-method | Method catchNames
catchNames,FLMetiers-method | Method catchNames
catchNames-methods | Method catchNames
ccplot | Catch-curves plot
ccplot,formula,FLCohort-method | Catch-curves plot
ccplot-methods | Catch-curves plot
checkEqual | FLtest functions for running simple units tests
checkFail | FLtest functions for running simple units tests
checkFalse | FLtest functions for running simple units tests
checkIdentical | FLtest functions for running simple units tests
checkRun | FLtest functions for running simple units tests
checkTrue | FLtest functions for running simple units tests
coerce,data.frame,FLComp-method | Method coerce
coerce,data.frame,FLIndex-method | Method coerce
coerce,data.frame,FLQuant-method | Method coerce
coerce,data.frame,FLStock-method | Method coerce
coerce,FLArray,data.frame-method | Method as.data.frame
coerce,FLBiol,FLIndex-method | Method coerce
coerce,FLBiol,FLStock-method | Method coerce
coerce,FLCatch,FLIndex-method | Method coerce
coerce,FLCatch,FLMetier-method | Method coerce
coerce,FLCatch,FLMetiers-method | Method coerce
coerce,FLCatch,FLStock-method | Method coerce
coerce,FLCohort,FLQuant-method | Method coerce
coerce,FLComp,FLQuants-method | Method coerce
coerce,FLlst,list-method | Method coerce
coerce,FLPar,FLQuant-method | Method coerce
coerce,FLPar,list-method | Method coerce
coerce,FLPar,numeric-method | Method coerce
coerce,FLQuant,FLCohort-method | Method coerce
coerce,FLQuant,FLPar-method | Method coerce
coerce,FLStock,FLBiol-method | Method coerce
coerce,FLStock,FLCatch-method | Method coerce
coerce,FLStock,FLFleet-method | Method coerce
coerce,FLStock,FLIndex-method | Method coerce
coerce,FLStock,FLMetier-method | Method coerce
coerce,NULL,FLBiol-method | Method coerce
coerce,NULL,FLCatch-method | Method coerce
coerce,NULL,FLFleet-method | Method coerce
coerce,NULL,FLIndex-method | Method coerce
coerce,NULL,FLQuant-method | Method coerce
coerce,NULL,FLStock-method | Method coerce
computeCatch | Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLCatch-method | Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLFleet-method | Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLIndex-method | Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLMetier-method | Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLStock-method | Methods to compute total catch, landings, discards and stock biomass
computeCatch-methods | Methods to compute total catch, landings, discards and stock biomass
computeDiscards | Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLCatch-method | Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLFleet-method | Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLMetier-method | Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLStock-method | Methods to compute total catch, landings, discards and stock biomass
computeDiscards-methods | Methods to compute total catch, landings, discards and stock biomass
computeLandings | Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLCatch-method | Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLFleet-method | Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLMetier-method | Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLStock-method | Methods to compute total catch, landings, discards and stock biomass
computeLandings-methods | Methods to compute total catch, landings, discards and stock biomass
computeStock | Methods to compute total catch, landings, discards and stock biomass
computeStock,FLBiol-method | Methods to compute total catch, landings, discards and stock biomass
computeStock,FLCatch-method | Methods to compute total catch, landings, discards and stock biomass
computeStock,FLStock-method | Methods to compute total catch, landings, discards and stock biomass
computeStock-methods | Methods to compute total catch, landings, discards and stock biomass
convert6d | FLCore-internal
convertFLPar | FLCore-internal
convertFLPar,FLModel-method | FLCore-internal
convertFLPar,FLPar-method | FLCore-internal
convertFLPar-methods | FLCore-internal
covar | Accesor and replacement methods for complex S4 classes
covar,FLSR-method | Accesor and replacement methods for complex S4 classes
covar-methods | Accesor and replacement methods for complex S4 classes
covar<- | Accesor and replacement methods for complex S4 classes
covar<-,FLSR,FLQuants-method | Accesor and replacement methods for complex S4 classes
covar<-,FLSR-method | Accesor and replacement methods for complex S4 classes
covar<--methods | Accesor and replacement methods for complex S4 classes
createFLAccesors | Create accesor methods for a given class
crewshare | Accesor and replacement methods for complex S4 classes
crewshare,FLFleet-method | Accesor and replacement methods for complex S4 classes
crewshare-methods | Accesor and replacement methods for complex S4 classes
crewshare<- | Accesor and replacement methods for complex S4 classes
crewshare<-,FLFleet,FLQuant-method | Accesor and replacement methods for complex S4 classes
crewshare<-,FLFleet,numeric-method | Accesor and replacement methods for complex S4 classes
crewshare<--methods | Accesor and replacement methods for complex S4 classes
cv | Coefficient of Variation of FLR objects with multiple iterations
cv,FLModel-method | Coefficient of Variation of FLR objects with multiple iterations
cv,FLQuant-method | Coefficient of Variation of FLR objects with multiple iterations
cv-methods | Coefficient of Variation of FLR objects with multiple iterations

## -- D --

densityplot,formula,FLPar-method | Lattice plots
desc | Accesor and replacement methods for complex S4 classes
desc,FLBiol-method | Accesor and replacement methods for complex S4 classes
desc,FLCatch-method | Accesor and replacement methods for complex S4 classes
desc,FLFleet-method | Accesor and replacement methods for complex S4 classes
desc,FLIndex-method | Accesor and replacement methods for complex S4 classes
desc,FLMetier-method | Accesor and replacement methods for complex S4 classes
desc,FLModel-method | Accesor and replacement methods for complex S4 classes
desc,FLStock-method | Accesor and replacement methods for complex S4 classes
desc-methods | Accesor and replacement methods for complex S4 classes
desc<- | Accesor and replacement methods for complex S4 classes
desc<-,FLBiol,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLCatch,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLFleet,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLIndex,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLMetier,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLModel,character-method | Accesor and replacement methods for complex S4 classes
desc<-,FLStock,character-method | Accesor and replacement methods for complex S4 classes
desc<--methods | Accesor and replacement methods for complex S4 classes
details | Accesor and replacement methods for complex S4 classes
details,FLModel-method | Accesor and replacement methods for complex S4 classes
details-methods | Accesor and replacement methods for complex S4 classes
details<- | Accesor and replacement methods for complex S4 classes
details<-,FLModel,list-method | Accesor and replacement methods for complex S4 classes
details<--methods | Accesor and replacement methods for complex S4 classes
dimMeans | Methods to compute sums, means and vars of FLQuant objects
dimMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
dimMeans-methods | Methods to compute sums, means and vars of FLQuant objects
dimnames<-,ANY,missing-method | Modify dimnames of an FLQuant
dimnames<-,FLQuant,list-method | Modify dimnames of an FLQuant
dimnames<-,FLStock,list-method | Modify dimnames of an FLQuant
dims | List with information on object dimensions
dims,FLCohort-method | List with information on object dimensions
dims,FLComp-method | List with information on object dimensions
dims,FLFleet-method | List with information on object dimensions
dims,FLFleets-method | List with information on object dimensions
dims,FLIndex-method | List with information on object dimensions
dims,FLPar-method | List with information on object dimensions
dims,FLQuant-method | List with information on object dimensions
dims-methods | List with information on object dimensions
dimSums | Methods to compute sums, means and vars of FLQuant objects
dimSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
dimSums-methods | Methods to compute sums, means and vars of FLQuant objects
dimVars | Methods to compute sums, means and vars of FLQuant objects
dimVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
dimVars-methods | Methods to compute sums, means and vars of FLQuant objects
discards | Accesor and replacement methods for complex S4 classes
discards,FLCatch-method | Accesor and replacement methods for the FLCatch class
discards,FLCatches-method | Accesor and replacement methods for the FLCatch class
discards,FLFleet-method | Accesor and replacement methods for the FLCatch class
discards,FLMetier-method | Accesor and replacement methods for the FLCatch class
discards,FLMetiers-method | Accesor and replacement methods for the FLCatch class
discards,FLStock-method | Accesor and replacement methods for complex S4 classes
discards-methods | Accesor and replacement methods for complex S4 classes
discards.n | Accesor and replacement methods for complex S4 classes
discards.n,FLCatch-method | Accesor and replacement methods for the FLCatch class
discards.n,FLCatches-method | Accesor and replacement methods for the FLCatch class
discards.n,FLFleet-method | Accesor and replacement methods for the FLCatch class
discards.n,FLIndex-method | Accesor and replacement methods for complex S4 classes
discards.n,FLMetier-method | Accesor and replacement methods for the FLCatch class
discards.n,FLMetiers-method | Accesor and replacement methods for the FLCatch class
discards.n,FLStock-method | Accesor and replacement methods for complex S4 classes
discards.n-methods | Accesor and replacement methods for complex S4 classes
discards.n<- | Accesor and replacement methods for complex S4 classes
discards.n<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.n<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.n<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.n<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
discards.n<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.n<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.n<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
discards.n<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
discards.n<--methods | Accesor and replacement methods for complex S4 classes
discards.q | Accesor and replacement methods for complex S4 classes
discards.q,FLCatch-method | Accesor and replacement methods for the FLCatch class
discards.q,FLCatches-method | Accesor and replacement methods for the FLCatch class
discards.q,FLFleet-method | Accesor and replacement methods for the FLCatch class
discards.q,FLMetier-method | Accesor and replacement methods for the FLCatch class
discards.q,FLMetiers-method | Accesor and replacement methods for the FLCatch class
discards.q-methods | Accesor and replacement methods for complex S4 classes
discards.q<- | Accesor and replacement methods for complex S4 classes
discards.q<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.q<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.q<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.q<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.q<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.q<--methods | Accesor and replacement methods for complex S4 classes
discards.sel | Accesor and replacement methods for complex S4 classes
discards.sel,FLCatch-method | Accesor and replacement methods for the FLCatch class
discards.sel,FLCatches-method | Accesor and replacement methods for the FLCatch class
discards.sel,FLFleet-method | Accesor and replacement methods for the FLCatch class
discards.sel,FLMetier-method | Accesor and replacement methods for the FLCatch class
discards.sel,FLMetiers-method | Accesor and replacement methods for the FLCatch class
discards.sel-methods | Accesor and replacement methods for complex S4 classes
discards.sel<- | Accesor and replacement methods for complex S4 classes
discards.sel<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.sel<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.sel<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.sel<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.sel<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.sel<--methods | Accesor and replacement methods for complex S4 classes
discards.wt | Accesor and replacement methods for complex S4 classes
discards.wt,FLCatch-method | Accesor and replacement methods for the FLCatch class
discards.wt,FLCatches-method | Accesor and replacement methods for the FLCatch class
discards.wt,FLFleet-method | Accesor and replacement methods for the FLCatch class
discards.wt,FLIndex-method | Accesor and replacement methods for complex S4 classes
discards.wt,FLMetier-method | Accesor and replacement methods for the FLCatch class
discards.wt,FLMetiers-method | Accesor and replacement methods for the FLCatch class
discards.wt,FLStock-method | Accesor and replacement methods for complex S4 classes
discards.wt-methods | Accesor and replacement methods for complex S4 classes
discards.wt<- | Accesor and replacement methods for complex S4 classes
discards.wt<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.wt<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.wt<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.wt<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
discards.wt<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
discards.wt<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.wt<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards.wt<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
discards.wt<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
discards.wt<--methods | Accesor and replacement methods for complex S4 classes
discards<- | Accesor and replacement methods for complex S4 classes
discards<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
discards<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
discards<-,FLStock,FLQuants-method | Accesor and replacement methods for complex S4 classes
discards<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
discards<--methods | Accesor and replacement methods for complex S4 classes
dotplot,formula,FLComp-method | Lattice plots
dotplot,formula,FLQuant-method | Lattice plots

## -- E --

E | Method E
E,FLQuant-method | Method E
E-methods | Method E
effort | Accesor and replacement methods for complex S4 classes
effort,FLFleet,character-method | Accesor and replacement methods for complex S4 classes
effort,FLFleet,missing-method | Accesor and replacement methods for complex S4 classes
effort,FLIndex,missing-method | Accesor and replacement methods for complex S4 classes
effort-methods | Accesor and replacement methods for complex S4 classes
effort<- | Accesor and replacement methods for complex S4 classes
effort<-,FLFleet,FLQuant-method | Accesor and replacement methods for complex S4 classes
effort<-,FLFleet,numeric-method | Accesor and replacement methods for complex S4 classes
effort<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
effort<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
effort<--methods | Accesor and replacement methods for complex S4 classes
effshare | Accesor and replacement methods for complex S4 classes
effshare,FLFleet-method | Accesor and replacement methods for complex S4 classes
effshare,FLMetier-method | Accesor and replacement methods for complex S4 classes
effshare,FLMetiers-method | Accesor and replacement methods for complex S4 classes
effshare-methods | Accesor and replacement methods for complex S4 classes
effshare<- | Accesor and replacement methods for complex S4 classes
effshare<-,FLMetier,FLQuant-method | Accesor and replacement methods for complex S4 classes
effshare<-,FLMetier,numeric-method | Accesor and replacement methods for complex S4 classes
effshare<--methods | Accesor and replacement methods for complex S4 classes
expand | Trim FLR objects using named dimensions
expand,FLArray-method | Trim FLR objects using named dimensions
expand,FLComp-method | Trim FLR objects using named dimensions
expand,FLQuant-method | Trim FLR objects using named dimensions
expand,FLStock-method | Trim FLR objects using named dimensions
expand-methods | Trim FLR objects using named dimensions
Extract-FLCore | Extract or Replace Parts of an FLR Object

## -- F --

fbar | Calculates mean harvest rate or fishing mortality
fbar,FLBiol-method | Calculates mean harvest rate or fishing mortality
fbar,FLStock-method | Calculates mean harvest rate or fishing mortality
fbar-methods | Calculates mean harvest rate or fishing mortality
fcost | Accesor and replacement methods for complex S4 classes
fcost,FLFleet-method | Accesor and replacement methods for complex S4 classes
fcost-methods | Accesor and replacement methods for complex S4 classes
fcost<- | Accesor and replacement methods for complex S4 classes
fcost<-,FLFleet,FLQuant-method | Accesor and replacement methods for complex S4 classes
fcost<-,FLFleet,numeric-method | Accesor and replacement methods for complex S4 classes
fcost<--methods | Accesor and replacement methods for complex S4 classes
fec | Accesor and replacement methods for complex S4 classes
fec,FLBiol-method | Accesor and replacement methods for complex S4 classes
fec-methods | Accesor and replacement methods for complex S4 classes
fec<- | Accesor and replacement methods for complex S4 classes
fec<-,FLBiol,FLQuant-method | Accesor and replacement methods for complex S4 classes
fec<-,FLBiol,numeric-method | Accesor and replacement methods for complex S4 classes
fec<--methods | Accesor and replacement methods for complex S4 classes
finishTest | FLtest functions for running simple units tests
fitted,ANY-method | Accesor and replacement methods for complex S4 classes
fitted,FLModel-method | Accesor and replacement methods for complex S4 classes
fitted<- | Accesor and replacement methods for complex S4 classes
fitted<-,FLModel,FLArray-method | Accesor and replacement methods for complex S4 classes
fitted<-,FLModel,numeric-method | Accesor and replacement methods for complex S4 classes
fitted<--methods | Accesor and replacement methods for complex S4 classes
FLArray | Class FLArray
FLArray-class | Class FLArray
FLBiol | Class FLBiol
FLBiol,FLQuant-method | Class FLBiol
FLBiol,missing-method | Class FLBiol
FLBiol-class | Class FLBiol
FLBiol-methods | Class FLBiol
FLBiols | Class FLBiols
FLBiols,ANY-method | Class FLBiols
FLBiols,list-method | Class FLBiols
FLBiols,missing-method | Class FLBiols
FLBiols-class | Class FLBiols
FLBiols-methods | Class FLBiols
flc2flq | Coerce FLCohort into FLQuant.
flc2flq,FLCohort-method | Coerce FLCohort into FLQuant.
flc2flq-methods | Coerce FLCohort into FLQuant.
FLCatch | Class FLCatch
FLCatch,FLQuant-method | Class FLCatch
FLCatch,missing-method | Class FLCatch
FLCatch-accesors | Accesor and replacement methods for the FLCatch class
FLCatch-class | Class FLCatch
FLCatch-methods | Class FLCatch
FLCatches | Class FLCatches
FLCatches,ANY-method | Class FLCatches
FLCatches,list-method | Class FLCatches
FLCatches,missing-method | Class FLCatches
FLCatches-class | Class FLCatches
FLCatches-methods | Class FLCatches
FLCohort | Class FLCohort
FLCohort,array-method | Class FLCohort
FLCohort,FLCohort-method | Class FLCohort
FLCohort,FLQuant-method | Class FLCohort
FLCohort,missing-method | Class FLCohort
FLCohort-class | Class FLCohort
FLCohort-methods | Class FLCohort
FLCohorts | Class FLCohorts
FLCohorts,ANY-method | Class FLCohorts
FLCohorts,FLCohorts-method | Class FLCohorts
FLCohorts,list-method | Class FLCohorts
FLCohorts,missing-method | Class FLCohorts
FLCohorts-class | Class FLCohorts
FLCohorts-methods | Class FLCohorts
FLComp | Class FLComp
FLComp-class | Class FLComp
FLCore | Core package of FLR, fisheries modelling in R.
FLFleet | Class FLFleet
FLFleet,FLCatch-method | Class FLFleet
FLFleet,FLCatches-method | Class FLFleet
FLFleet,FLFleet-method | Class FLFleet
FLFleet,FLMetier-method | Class FLFleet
FLFleet,FLMetiers-method | Class FLFleet
FLFleet,FLQuant-method | Class FLFleet
FLFleet,missing-method | Class FLFleet
FLFleet-class | Class FLFleet
FLFleet-methods | Class FLFleet
FLFleets | Class FLFleets
FLFleets,ANY-method | Class FLFleets
FLFleets,list-method | Class FLFleets
FLFleets,missing-method | Class FLFleets
FLFleets-class | Class FLFleets
FLFleets-methods | Class FLFleets
FLIndex | Class FLIndex
FLIndex,FLQuant-method | Class FLIndex
FLIndex,missing-method | Class FLIndex
FLIndex-class | Class FLIndex
FLIndex-methods | Class FLIndex
FLIndices | Class FLIndices
FLIndices,ANY-method | Class FLIndices
FLIndices,list-method | Class FLIndices
FLIndices,missing-method | Class FLIndices
FLIndices-class | Class FLIndices
FLIndices-methods | Class FLIndices
FLlst | Class FLlst
FLlst,ANY-method | Class FLlst
FLlst,list-method | Class FLlst
FLlst,missing-method | Class FLlst
FLlst-class | Class FLlst
FLlst-methods | Class FLlst
FLMetier | Class FLMetier
FLMetier,FLCatch-method | Class FLMetier
FLMetier,FLCatches-method | Class FLMetier
FLMetier,FLQuant-method | Class FLMetier
FLMetier,missing-method | Class FLMetier
FLMetier-class | Class FLMetier
FLMetier-methods | Class FLMetier
FLMetiers | Class FLMetiers
FLMetiers,ANY-method | Class FLMetiers
FLMetiers,list-method | Class FLMetiers
FLMetiers,missing-method | Class FLMetiers
FLMetiers-class | Class FLMetiers
FLMetiers-methods | Class FLMetiers
FLModel | Class FLModel for statistical models
FLModel,character-method | Class FLModel for statistical models
FLModel,formula-method | Class FLModel for statistical models
FLModel,function-method | Class FLModel for statistical models
FLModel,missing-method | Class FLModel for statistical models
FLModel-class | Class FLModel for statistical models
FLModel-methods | Class FLModel for statistical models
FLPar | Class FLPar
FLPar,array-method | Class FLPar
FLPar,FLPar-method | Class FLPar
FLPar,missing-method | Class FLPar
FLPar,vector-method | Class FLPar
FLPar-class | Class FLPar
FLPar-methods | Class FLPar
FLQuant | FLQuant class for numerical data
FLQuant,array-method | FLQuant class for numerical data
FLQuant,FLQuant-method | FLQuant class for numerical data
FLQuant,matrix-method | FLQuant class for numerical data
FLQuant,missing-method | FLQuant class for numerical data
FLQuant,vector-method | FLQuant class for numerical data
FLQuant-class | FLQuant class for numerical data
FLQuant-methods | FLQuant class for numerical data
FLQuantPoint | Class FLQuantPoint
FLQuantPoint,FLQuant-method | Class FLQuantPoint
FLQuantPoint-accesors | Method lowq
FLQuantPoint-class | Class FLQuantPoint
FLQuantPoint-methods | Class FLQuantPoint
FLQuants | Class FLQuants
FLQuants,ANY-method | Class FLQuants
FLQuants,FLQuants-method | Class FLQuants
FLQuants,list-method | Class FLQuants
FLQuants,missing-method | Class FLQuants
FLQuants-class | Class FLQuants
FLQuants-methods | Class FLQuants
FLSR | Class FLSR
FLSR,ANY-method | Class FLSR
FLSR,missing-method | Class FLSR
FLSR-class | Class FLSR
FLSR-methods | Class FLSR
FLStock | Class FLStock
FLStock,FLQuant-method | Class FLStock
FLStock,missing-method | Class FLStock
FLStock-class | Class FLStock
FLStock-methods | Class FLStock
FLStocks | Class FLStocks
FLStocks,ANY-method | Class FLStocks
FLStocks,list-method | Class FLStocks
FLStocks,missing-method | Class FLStocks
FLStocks-class | Class FLStocks
FLStocks-methods | Class FLStocks
FLtest | FLtest functions for running simple units tests
fmle | Method fmle
fmle,ANY,missing-method | Method fmle
fmle,FLModel,ANY-method | Method fmle
fmle,FLModel,FLPar-method | Method fmle
fmle,FLModel-method | Method fmle

## -- G --

gear | Accesor and replacement methods for complex S4 classes
gear,ANY-method | Accesor and replacement methods for complex S4 classes
gear,FLMetier-method | Accesor and replacement methods for complex S4 classes
gear-methods | Accesor and replacement methods for complex S4 classes
gear<- | Accesor and replacement methods for complex S4 classes
gear<-,FLMetier,character-method | Accesor and replacement methods for complex S4 classes
gear<--methods | Accesor and replacement methods for complex S4 classes
geomean | Stock-Recruitment models
getPlural | FLCore-internal
gr | Accesor and replacement methods for complex S4 classes
gr,FLModel-method | Accesor and replacement methods for complex S4 classes
gr-methods | Accesor and replacement methods for complex S4 classes
gr<- | Accesor and replacement methods for complex S4 classes
gr<-,FLModel,function-method | Accesor and replacement methods for complex S4 classes
gr<--methods | Accesor and replacement methods for complex S4 classes

## -- H --

harvest | Accesor and replacement methods for complex S4 classes
harvest,FLBiol,missing-method | Harvest calculations for FLBiol
harvest,FLBiol-method | Harvest calculations for FLBiol
harvest,FLStock,missing-method | Accesor and replacement methods for complex S4 classes
harvest-methods | Accesor and replacement methods for complex S4 classes
harvest.spwn | Accesor and replacement methods for complex S4 classes
harvest.spwn,FLStock-method | Accesor and replacement methods for complex S4 classes
harvest.spwn-methods | Accesor and replacement methods for complex S4 classes
harvest.spwn<- | Accesor and replacement methods for complex S4 classes
harvest.spwn<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
harvest.spwn<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
harvest.spwn<--methods | Accesor and replacement methods for complex S4 classes
harvest<- | Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,character-method | Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
harvest<--methods | Accesor and replacement methods for complex S4 classes
histogram,formula,FLComp-method | Lattice plots
histogram,formula,FLPar-method | Lattice plots
histogram,formula,FLQuant-method | Lattice plots
histogram,formula,FLQuants-method | Lattice plots

## -- I --

index | Accesor and replacement methods for complex S4 classes
index,FLIndex-method | Accesor and replacement methods for complex S4 classes
index-methods | Accesor and replacement methods for complex S4 classes
index.q | Accesor and replacement methods for complex S4 classes
index.q,FLIndex-method | Accesor and replacement methods for complex S4 classes
index.q-methods | Accesor and replacement methods for complex S4 classes
index.q<- | Accesor and replacement methods for complex S4 classes
index.q<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
index.q<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
index.q<--methods | Accesor and replacement methods for complex S4 classes
index.var | Accesor and replacement methods for complex S4 classes
index.var,FLIndex-method | Accesor and replacement methods for complex S4 classes
index.var-methods | Accesor and replacement methods for complex S4 classes
index.var<- | Accesor and replacement methods for complex S4 classes
index.var<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
index.var<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
index.var<--methods | Accesor and replacement methods for complex S4 classes
index<- | Accesor and replacement methods for complex S4 classes
index<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
index<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
index<--methods | Accesor and replacement methods for complex S4 classes
initial | Accesor and replacement methods for complex S4 classes
initial,FLModel-method | Accesor and replacement methods for complex S4 classes
initial-methods | Accesor and replacement methods for complex S4 classes
initial<- | Accesor and replacement methods for complex S4 classes
initial<-,FLModel,function-method | Accesor and replacement methods for complex S4 classes
initial<--methods | Accesor and replacement methods for complex S4 classes
is.FLBiol | Methods to determine the class of a given object
is.FLBiols | Methods to determine the class of a given object
is.FLBiols,ANY-method | Methods to determine the class of a given object
is.FLBiols-methods | Methods to determine the class of a given object
is.FLCatches | Methods to determine the class of a given object
is.FLCatches,ANY-method | Methods to determine the class of a given object
is.FLCatches-methods | Methods to determine the class of a given object
is.FLFleets | Methods to determine the class of a given object
is.FLFleets,ANY-method | Methods to determine the class of a given object
is.FLFleets-methods | Methods to determine the class of a given object
is.FLIndices | Methods to determine the class of a given object
is.FLIndices,ANY-method | Methods to determine the class of a given object
is.FLIndices-methods | Methods to determine the class of a given object
is.FLMetiers | Methods to determine the class of a given object
is.FLMetiers,ANY-method | Methods to determine the class of a given object
is.FLMetiers-methods | Methods to determine the class of a given object
is.FLQuant | Methods to determine the class of a given object
is.FLQuants | Methods to determine the class of a given object
is.FLQuants,ANY-method | Methods to determine the class of a given object
is.FLQuants-methods | Methods to determine the class of a given object
is.FLStock | Methods to determine the class of a given object
is.FLStocks | Methods to determine the class of a given object
is.FLStocks,ANY-method | Methods to determine the class of a given object
is.FLStocks-methods | Methods to determine the class of a given object
iter | Select or modify iterations of an FLR object
iter,FLArray-method | Select or modify iterations of an FLR object
iter,FLComp-method | Select or modify iterations of an FLR object
iter,FLFleet-method | Select or modify iterations of an FLR object
iter,FLMetier-method | Select or modify iterations of an FLR object
iter,FLModel-method | Select or modify iterations of an FLR object
iter,FLPar-method | Select or modify iterations of an FLR object
iter,FLQuant,ANY-method | Select or modify iterations of an FLR object
iter,FLQuants-method | Select or modify iterations of an FLR object
iter,logLik-method | Select or modify iterations of an FLR object
iter,vector-method | Select or modify iterations of an FLR object
iter-methods | Select or modify iterations of an FLR object
iter<- | Select or modify iterations of an FLR object
iter<-,FLCohort,FLCohort-method | Select or modify iterations of an FLR object
iter<-,FLComp,FLComp-method | Select or modify iterations of an FLR object
iter<-,FLPar,FLPar-method | Select or modify iterations of an FLR object
iter<-,FLPar,numeric-method | Select or modify iterations of an FLR object
iter<-,FLQuant,FLQuant-method | Select or modify iterations of an FLR object
iter<--methods | Select or modify iterations of an FLR object
iterMeans | Methods to compute sums, means and vars of FLQuant objects
iterMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
iterMeans-methods | Methods to compute sums, means and vars of FLQuant objects
iters | Method iters
iters,FLQuant-method | Method iters
iters-methods | Method iters
iterVars | Methods to compute sums, means and vars of FLQuant objects
iterVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
iterVars-methods | Methods to compute sums, means and vars of FLQuant objects

## -- J --

jacknife | Jacknife resampling
jacknife,FLQuant-method | Jacknife resampling
jacknife-methods | Jacknife resampling

## -- L --

landings | Accesor and replacement methods for complex S4 classes
landings,FLCatch-method | Accesor and replacement methods for the FLCatch class
landings,FLCatches-method | Accesor and replacement methods for the FLCatch class
landings,FLFleet-method | Accesor and replacement methods for the FLCatch class
landings,FLMetier-method | Accesor and replacement methods for the FLCatch class
landings,FLMetiers-method | Accesor and replacement methods for the FLCatch class
landings,FLStock-method | Accesor and replacement methods for complex S4 classes
landings-methods | Accesor and replacement methods for complex S4 classes
landings.n | Accesor and replacement methods for complex S4 classes
landings.n,FLCatch-method | Accesor and replacement methods for the FLCatch class
landings.n,FLCatches-method | Accesor and replacement methods for the FLCatch class
landings.n,FLFleet-method | Accesor and replacement methods for the FLCatch class
landings.n,FLIndex-method | Accesor and replacement methods for complex S4 classes
landings.n,FLMetier-method | Accesor and replacement methods for the FLCatch class
landings.n,FLMetiers-method | Accesor and replacement methods for the FLCatch class
landings.n,FLStock-method | Accesor and replacement methods for complex S4 classes
landings.n-methods | Accesor and replacement methods for complex S4 classes
landings.n<- | Accesor and replacement methods for complex S4 classes
landings.n<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.n<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.n<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.n<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
landings.n<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.n<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.n<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
landings.n<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
landings.n<--methods | Accesor and replacement methods for complex S4 classes
landings.q | Accesor and replacement methods for complex S4 classes
landings.q,FLCatch-method | Accesor and replacement methods for the FLCatch class
landings.q,FLCatches-method | Accesor and replacement methods for the FLCatch class
landings.q,FLFleet-method | Accesor and replacement methods for the FLCatch class
landings.q,FLMetier-method | Accesor and replacement methods for the FLCatch class
landings.q,FLMetiers-method | Accesor and replacement methods for the FLCatch class
landings.q-methods | Accesor and replacement methods for complex S4 classes
landings.q<- | Accesor and replacement methods for complex S4 classes
landings.q<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.q<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.q<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.q<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.q<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.q<--methods | Accesor and replacement methods for complex S4 classes
landings.sel | Accesor and replacement methods for complex S4 classes
landings.sel,FLCatch-method | Accesor and replacement methods for the FLCatch class
landings.sel,FLCatches-method | Accesor and replacement methods for the FLCatch class
landings.sel,FLFleet-method | Accesor and replacement methods for the FLCatch class
landings.sel,FLMetier-method | Accesor and replacement methods for the FLCatch class
landings.sel,FLMetiers-method | Accesor and replacement methods for the FLCatch class
landings.sel-methods | Accesor and replacement methods for complex S4 classes
landings.sel<- | Accesor and replacement methods for complex S4 classes
landings.sel<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.sel<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.sel<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.sel<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.sel<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.sel<--methods | Accesor and replacement methods for complex S4 classes
landings.wt | Accesor and replacement methods for complex S4 classes
landings.wt,FLCatch-method | Accesor and replacement methods for the FLCatch class
landings.wt,FLCatches-method | Accesor and replacement methods for the FLCatch class
landings.wt,FLFleet-method | Accesor and replacement methods for the FLCatch class
landings.wt,FLIndex-method | Accesor and replacement methods for complex S4 classes
landings.wt,FLMetier-method | Accesor and replacement methods for the FLCatch class
landings.wt,FLMetiers-method | Accesor and replacement methods for the FLCatch class
landings.wt,FLStock-method | Accesor and replacement methods for complex S4 classes
landings.wt-methods | Accesor and replacement methods for complex S4 classes
landings.wt<- | Accesor and replacement methods for complex S4 classes
landings.wt<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.wt<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.wt<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.wt<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
landings.wt<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.wt<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings.wt<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
landings.wt<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
landings.wt<--methods | Accesor and replacement methods for complex S4 classes
landings<- | Accesor and replacement methods for complex S4 classes
landings<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
landings<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
landings<-,FLStock,FLQuants-method | Accesor and replacement methods for complex S4 classes
landings<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
landings<--methods | Accesor and replacement methods for complex S4 classes
lapply,FLlst,missing-method | Method lapply
lapply,FLlst-method | Method lapply
lattice-FLCore | Lattice plots
leslie | Method for calculating Leslie matrix dynamics of an FLBiol object
leslie,FLBiol-method | Method for calculating Leslie matrix dynamics of an FLBiol object
leslie-methods | Method for calculating Leslie matrix dynamics of an FLBiol object
logl | Accesor and replacement methods for complex S4 classes
logl,FLModel-method | Accesor and replacement methods for complex S4 classes
logl-methods | Accesor and replacement methods for complex S4 classes
logl.ar1 | Stock-Recruitment models
logl<- | Accesor and replacement methods for complex S4 classes
logl<-,FLModel,function-method | Accesor and replacement methods for complex S4 classes
logl<--methods | Accesor and replacement methods for complex S4 classes
logLik,ANY-method | Accesor and replacement methods for complex S4 classes
logLik,FLModel-method | Accesor and replacement methods for complex S4 classes
logLik<- | Accesor and replacement methods for complex S4 classes
logLik<-,FLModel,logLik-method | Accesor and replacement methods for complex S4 classes
logLik<-,FLModel,numeric-method | Accesor and replacement methods for complex S4 classes
logLik<--methods | Accesor and replacement methods for complex S4 classes
lower | Methods upper and lower
lower,FLModel-method | Methods upper and lower
lower<- | Methods upper and lower
lower<-,FLModel,numeric-method | Methods upper and lower
lowess,FLSR,missing-method | Method lowess
lowq | Method lowq
lowq,FLQuantPoint-method | Method lowq
lowq-methods | Method lowq
lowq<- | Method lowq
lowq<-,FLQuantPoint-method | Method lowq
lowq<--methods | Method lowq

## -- M --

m | Accesor and replacement methods for complex S4 classes
m,FLBiol-method | Accesor and replacement methods for complex S4 classes
m,FLStock-method | Accesor and replacement methods for complex S4 classes
m-methods | Accesor and replacement methods for complex S4 classes
m.spwn | Accesor and replacement methods for complex S4 classes
m.spwn,FLStock-method | Accesor and replacement methods for complex S4 classes
m.spwn-methods | Accesor and replacement methods for complex S4 classes
m.spwn<- | Accesor and replacement methods for complex S4 classes
m.spwn<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
m.spwn<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
m.spwn<--methods | Accesor and replacement methods for complex S4 classes
m<- | Accesor and replacement methods for complex S4 classes
m<-,FLBiol,FLQuant-method | Accesor and replacement methods for complex S4 classes
m<-,FLBiol,numeric-method | Accesor and replacement methods for complex S4 classes
m<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
m<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
m<--methods | Accesor and replacement methods for complex S4 classes
mat | Accesor and replacement methods for complex S4 classes
mat,FLStock-method | Accesor and replacement methods for complex S4 classes
mat-methods | Accesor and replacement methods for complex S4 classes
mat<- | Accesor and replacement methods for complex S4 classes
mat<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
mat<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
mat<--methods | Accesor and replacement methods for complex S4 classes
mcf | Method mcf
mcf,FLComp-method | Method mcf
mcf,list-method | Method mcf
mcf-methods | Method mcf
mean,FLPar-method | Method mean
mean,FLQuant-method | Method mean
mean,FLQuantPoint-method | Method lowq
mean.lifespan | Method for calculating mean lifespan, given the natural mortality
mean.lifespan,FLBiol-method | Method for calculating mean lifespan, given the natural mortality
mean.lifespan-methods | Method for calculating mean lifespan, given the natural mortality
mean<- | Method lowq
mean<-,FLQuantPoint-method | Method lowq
mean<--methods | Method lowq
median,FLPar,missing-method | Method median
median,FLPar-method | Method median
median,FLQuantPoint,missing-method | Method lowq
median,FLQuantPoint-method | Method lowq
median<- | Method lowq
median<-,FLQuantPoint-method | Method lowq
median<--methods | Method lowq
mergeFLStock | Merging FLStock objects
metier | Method metier
metier,FLFleet,ANY-method | Method metier
metier,FLFleet-method | Method metier
metier-methods | Method metier
metier<- | Method metier
metier<-,FLFleet,ANY,FLMetier-method | Method metier
metier<--methods | Method metier
metiers | Accesor and replacement methods for complex S4 classes
metiers,FLFleet-method | Accesor and replacement methods for complex S4 classes
metiers-methods | Accesor and replacement methods for complex S4 classes
metiers<- | Accesor and replacement methods for complex S4 classes
metiers<-,FLFleet,FLMetiers-method | Accesor and replacement methods for complex S4 classes
metiers<--methods | Accesor and replacement methods for complex S4 classes
model | Accesor and replacement methods for complex S4 classes
model,FLModel-method | Accesor and replacement methods for complex S4 classes
model-methods | Accesor and replacement methods for complex S4 classes
model.frame,FLComp-method | Method model.frame
model.frame,FLlst-method | Method model.frame
model<- | Accesor and replacement methods for complex S4 classes
model<-,FLModel,character-method | Accesor and replacement methods for complex S4 classes
model<-,FLModel,formula-method | Accesor and replacement methods for complex S4 classes
model<-,FLModel,function-method | Accesor and replacement methods for complex S4 classes
model<-,FLModel,list-method | Accesor and replacement methods for complex S4 classes
model<--methods | Accesor and replacement methods for complex S4 classes

## -- N --

n | Accesor and replacement methods for complex S4 classes
n,FLBiol-method | Accesor and replacement methods for complex S4 classes
n-methods | Accesor and replacement methods for complex S4 classes
n<- | Accesor and replacement methods for complex S4 classes
n<-,FLBiol,FLQuant-method | Accesor and replacement methods for complex S4 classes
n<-,FLBiol,numeric-method | Accesor and replacement methods for complex S4 classes
n<--methods | Accesor and replacement methods for complex S4 classes
name | Accesor and replacement methods for complex S4 classes
name,FLBiol-method | Accesor and replacement methods for complex S4 classes
name,FLCatch-method | Accesor and replacement methods for complex S4 classes
name,FLFleet-method | Accesor and replacement methods for complex S4 classes
name,FLIndex-method | Accesor and replacement methods for complex S4 classes
name,FLMetier-method | Accesor and replacement methods for complex S4 classes
name,FLModel-method | Accesor and replacement methods for complex S4 classes
name,FLStock-method | Accesor and replacement methods for complex S4 classes
name-methods | Accesor and replacement methods for complex S4 classes
name<- | Accesor and replacement methods for complex S4 classes
name<-,FLBiol,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLCatch,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLFleet,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLIndex,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLMetier,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLModel,character-method | Accesor and replacement methods for complex S4 classes
name<-,FLStock,character-method | Accesor and replacement methods for complex S4 classes
name<--methods | Accesor and replacement methods for complex S4 classes
names,FLArray-method | Method names
names,FLlst-method | Method names
names,FLPar-method | Method names
names<-,FLPar,character-method | Method names
nls,FLModel,missing,missing,missing,missing,missing,missing,missing,missing,missing,missing,missing-method | Method nls
nls,FLModel,missing-method | Method nls
nls-FLCore | Method nls
nsher | FLCore datasets

## -- P --

params | Accesor and replacement methods for complex S4 classes
params,FLModel-method | Accesor and replacement methods for complex S4 classes
params-methods | Accesor and replacement methods for complex S4 classes
params<- | Accesor and replacement methods for complex S4 classes
params<-,FLModel,FLPar-method | Accesor and replacement methods for complex S4 classes
params<--methods | Accesor and replacement methods for complex S4 classes
ple4 | FLCore datasets
ple4.biol | FLCore datasets
ple4.index | FLCore datasets
ple4.indices | FLCore datasets
ple4sex | FLCore datasets
plot,FLBiol,missing-method | Method plot
plot,FLCohort,missing-method | Method plot
plot,FLIndex,missing-method | Method plot
plot,FLIndices,missing-method | Method plot
plot,FLPar,missing-method | Method plot
plot,FLQuant,missing-method | Method plot
plot,FLQuantPoint,missing-method | Method plot
plot,FLSR,missing-method | Method plot
plot,FLStock,missing-method | Method plot
plot,FLStocks,FLPar-method | Method plot
plot,FLStocks,missing-method | Method plot
predict,FLModel-method | Method predict
price | Accesor and replacement methods for complex S4 classes
price,FLCatch-method | Accesor and replacement methods for the FLCatch class
price,FLCatches-method | Accesor and replacement methods for the FLCatch class
price,FLFleet-method | Accesor and replacement methods for the FLCatch class
price,FLMetier-method | Accesor and replacement methods for the FLCatch class
price,FLMetiers-method | Accesor and replacement methods for the FLCatch class
price-methods | Accesor and replacement methods for complex S4 classes
price<- | Accesor and replacement methods for complex S4 classes
price<-,FLCatch,FLQuant-method | Accesor and replacement methods for the FLCatch class
price<-,FLCatches,FLQuant-method | Accesor and replacement methods for the FLCatch class
price<-,FLFleet,FLQuant-method | Accesor and replacement methods for the FLCatch class
price<-,FLMetier,FLQuant-method | Accesor and replacement methods for the FLCatch class
price<-,FLMetiers,FLQuant-method | Accesor and replacement methods for the FLCatch class
price<--methods | Accesor and replacement methods for complex S4 classes
print,FLQuant-method | Method print
propagate | Extend an FLQuant along the iter dimension
propagate,FLCohort-method | Extend an FLQuant along the iter dimension
propagate,FLComp-method | Extend an FLQuant along the iter dimension
propagate,FLFleet-method | Extend an FLQuant along the iter dimension
propagate,FLMetier-method | Extend an FLQuant along the iter dimension
propagate,FLPar-method | Extend an FLQuant along the iter dimension
propagate,FLQuant-method | Extend an FLQuant along the iter dimension
propagate-methods | Extend an FLQuant along the iter dimension
pv | Population variability
pv,FLQuant-method | Population variability
pv-methods | Population variability

## -- Q --

qapply | Method qapply
qapply,FLComp,function-method | Method qapply
qapply-methods | Method qapply
quant | Method quant
quant,FLArray-method | Method quant
quant-methods | Method quant
quant<- | Method quant
quant<-,FLArray,character-method | Method quant
quant<-,FLArray,missing-method | Method quant
quant<-,FLArray-method | Method quant
quant<--methods | Method quant
quantile,FLQuant-method | Method quantile
quantile,FLQuantPoint-method | Method quantile
quantMeans | Methods to compute sums, means and vars of FLQuant objects
quantMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
quantMeans-methods | Methods to compute sums, means and vars of FLQuant objects
quantSums | Methods to compute sums, means and vars of FLQuant objects
quantSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
quantSums-methods | Methods to compute sums, means and vars of FLQuant objects
quantTotals | Method quantTotals
quantTotals,FLQuant-method | Method quantTotals
quantTotals-methods | Method quantTotals
quantVars | Methods to compute sums, means and vars of FLQuant objects
quantVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
quantVars-methods | Methods to compute sums, means and vars of FLQuant objects

## -- R --

r | Intrinsic rate of increase from an FLBiol object
r,FLBiol-method | Intrinsic rate of increase from an FLBiol object
r-methods | Intrinsic rate of increase from an FLBiol object
range,FLComp,missing-method | Method range
range,FLComp-method | Method range
range,FLlst-method | Method range
range-methods | Method range
range<- | Method range
range<-,FLComp-method | Method range
range<--methods | Method range
read.FLIndex | Input/Output of FLR objects
read.FLIndices | Input/Output of FLR objects
read.FLStock | Input/Output of FLR objects
readFLIndex | Input/Output of FLR objects
readFLIndices | Input/Output of FLR objects
readFLStock | Input/Output of FLR objects
readVPAFile | Input/Output of FLR objects
rec | Accesor and replacement methods for complex S4 classes
rec,FLBiol-method | Accesor and replacement methods for complex S4 classes
rec,FLSR-method | Accesor and replacement methods for complex S4 classes
rec,FLStock-method | Accesor and replacement methods for complex S4 classes
rec-methods | Accesor and replacement methods for complex S4 classes
rec<- | Accesor and replacement methods for complex S4 classes
rec<-,FLSR,FLQuant-method | Accesor and replacement methods for complex S4 classes
rec<-,FLSR,numeric-method | Accesor and replacement methods for complex S4 classes
rec<--methods | Accesor and replacement methods for complex S4 classes
residuals,ANY-method | Accesor and replacement methods for complex S4 classes
residuals,FLModel-method | Accesor and replacement methods for complex S4 classes
residuals<- | Accesor and replacement methods for complex S4 classes
residuals<-,FLModel,FLArray-method | Accesor and replacement methods for complex S4 classes
residuals<-,FLModel,numeric-method | Accesor and replacement methods for complex S4 classes
residuals<--methods | Accesor and replacement methods for complex S4 classes
revenue | Method revenue
revenue,FLCatch-method | Method revenue
revenue,FLCatches-method | Method revenue
revenue,FLFleet-method | Method revenue
revenue,FLMetier-method | Method revenue
revenue,FLMetiers-method | Method revenue
revenue-methods | Method revenue
rgamma,numeric,FLQuantPoint,missing,missing-method | Method rgamma
ricker | Stock-Recruitment models
ricker.ar1 | Stock-Recruitment models
ricker.c.a | Stock-Recruitment models
ricker.c.b | Stock-Recruitment models
ricker.d | Stock-Recruitment models
Ricker.SV | Stock-Recruitment models
ricker.sv | Stock-Recruitment models
rlnorm,numeric,FLQuant,FLQuant-method | Method rlnorm
rlnorm,numeric,FLQuant,missing-method | Method rlnorm
rlnorm,numeric,FLQuant,numeric-method | Method rlnorm
rlnorm,numeric,FLQuantPoint,missing-method | Method rlnorm
rlnorm,numeric,missing,FLQuant-method | Method rlnorm
rlnorm,numeric,numeric,FLQuant-method | Method rlnorm
rnorm,numeric,FLQuant,FLQuant-method | Method rnorm
rnorm,numeric,FLQuant,missing-method | Method rnorm
rnorm,numeric,FLQuant,numeric-method | Method rnorm
rnorm,numeric,FLQuantPoint,missing-method | Method rnorm
rnorm,numeric,missing,FLQuant-method | Method rnorm
rnorm,numeric,numeric,FLQuant-method | Method rnorm
rpois,numeric,FLQuant-method | Method rpois

## -- S --

sd,FLModel,missing-method | Standard deviation of an FLModel object
seasonMeans | Methods to compute sums, means and vars of FLQuant objects
seasonMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
seasonMeans-methods | Methods to compute sums, means and vars of FLQuant objects
seasonSums | Methods to compute sums, means and vars of FLQuant objects
seasonSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
seasonSums-methods | Methods to compute sums, means and vars of FLQuant objects
seasonVars | Methods to compute sums, means and vars of FLQuant objects
seasonVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
seasonVars-methods | Methods to compute sums, means and vars of FLQuant objects
segreg | Stock-Recruitment models
sel.pattern | Accesor and replacement methods for complex S4 classes
sel.pattern,FLIndex-method | Accesor and replacement methods for complex S4 classes
sel.pattern-methods | Accesor and replacement methods for complex S4 classes
sel.pattern<- | Accesor and replacement methods for complex S4 classes
sel.pattern<-,FLIndex,FLQuant-method | Accesor and replacement methods for complex S4 classes
sel.pattern<-,FLIndex,numeric-method | Accesor and replacement methods for complex S4 classes
sel.pattern<--methods | Accesor and replacement methods for complex S4 classes
setCon | FLtest functions for running simple units tests
setPlusGroup | Method setPlusGroup
setPlusGroup,FLBiol,numeric-method | Method setPlusGroup
setPlusGroup,FLCatch,numeric-method | Method setPlusGroup
setPlusGroup,FLQuant,numeric-method | Method setPlusGroup
setPlusGroup,FLStock,numeric-method | Method setPlusGroup
setPlusGroup-methods | Method setPlusGroup
shepherd | Stock-Recruitment models
shepherd.ar1 | Stock-Recruitment models
shepherd.d | Stock-Recruitment models
shepherd.d.ar1 | Stock-Recruitment models
shepherd.ndc | Stock-Recruitment models
shepherd.ndc.ar1 | Stock-Recruitment models
show,FLArray-method | Method show
show,FLPar-method | Method show
show,FLQuant-method | Method show
show,FLQuantPoint-method | Method show
show,FLQuants-method | Method show
sop | Calculates the sum of products correction
splom,FLPar,missing-method | Method splom
spp | Accesor and replacement methods for complex S4 classes
spp,FLCatch-method | Accesor and replacement methods for complex S4 classes
spp,FLCatches-method | Accesor and replacement methods for complex S4 classes
spp,FLFleet-method | Accesor and replacement methods for complex S4 classes
spp,FLFleets-method | Accesor and replacement methods for complex S4 classes
spp,FLMetier-method | Accesor and replacement methods for complex S4 classes
spp,FLMetiers-method | Accesor and replacement methods for complex S4 classes
spp-methods | Accesor and replacement methods for complex S4 classes
spp<-,FLCatch,character-method | Accesor and replacement methods for complex S4 classes
spp<--methods | Accesor and replacement methods for complex S4 classes
spr0 | Method spr0
spr0,FLQuant,FLQuant,FLQuant-method | Method spr0
spr0,FLSR,missing,FLQuant-method | Method spr0
spr0,FLStock,missing,missing-method | Method spr0
spr0-methods | Method spr0
spwn | Accesor and replacement methods for complex S4 classes
spwn,FLBiol-method | Accesor and replacement methods for complex S4 classes
spwn-methods | Accesor and replacement methods for complex S4 classes
spwn<- | Accesor and replacement methods for complex S4 classes
spwn<-,FLBiol,FLQuant-method | Accesor and replacement methods for complex S4 classes
spwn<-,FLBiol,numeric-method | Accesor and replacement methods for complex S4 classes
spwn<--methods | Accesor and replacement methods for complex S4 classes
sr | Stock-recruitment model function
SRModelName | Convenience function to identify an SR model by its formula
SRModels | Stock-Recruitment models
ssb | Method ssb
ssb,FLBiol-method | Method ssb
ssb,FLSR-method | Accesor and replacement methods for complex S4 classes
ssb,FLStock-method | Method ssb
ssb-methods | Method ssb
ssb<- | Accesor and replacement methods for complex S4 classes
ssb<-,FLSR,FLQuant-method | Accesor and replacement methods for complex S4 classes
ssb<-,FLSR,numeric-method | Accesor and replacement methods for complex S4 classes
ssb<--methods | Accesor and replacement methods for complex S4 classes
ssbpurec | Method ssbpurec
ssbpurec,FLStock-method | Method ssbpurec
ssbpurec-methods | Method ssbpurec
ssn | Method ssn
ssn,FLBiol-method | Method ssn
ssn-methods | Method ssn
startTest | FLtest functions for running simple units tests
stock | Accesor and replacement methods for complex S4 classes
stock,FLStock-method | Accesor and replacement methods for complex S4 classes
stock-methods | Accesor and replacement methods for complex S4 classes
stock.n | Accesor and replacement methods for complex S4 classes
stock.n,FLStock-method | Accesor and replacement methods for complex S4 classes
stock.n-methods | Accesor and replacement methods for complex S4 classes
stock.n<- | Accesor and replacement methods for complex S4 classes
stock.n<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
stock.n<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
stock.n<--methods | Accesor and replacement methods for complex S4 classes
stock.wt | Accesor and replacement methods for complex S4 classes
stock.wt,FLStock-method | Accesor and replacement methods for complex S4 classes
stock.wt-methods | Accesor and replacement methods for complex S4 classes
stock.wt<- | Accesor and replacement methods for complex S4 classes
stock.wt<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
stock.wt<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
stock.wt<--methods | Accesor and replacement methods for complex S4 classes
stock<- | Accesor and replacement methods for complex S4 classes
stock<-,FLStock,FLQuant-method | Accesor and replacement methods for complex S4 classes
stock<-,FLStock,numeric-method | Accesor and replacement methods for complex S4 classes
stock<--methods | Accesor and replacement methods for complex S4 classes
stripplot,formula,FLComp-method | Lattice plots
stripplot,formula,FLQuant-method | Lattice plots
summary,FLArray-method | Method summary
summary,FLComp-method | Method summary
summary,FLFleet-method | Method summary
summary,FLlst-method | Method summary
summary,FLMetier-method | Method summary
summary,FLModel-method | Method summary
summary,FLPar-method | Method summary
summary,FLQuant-method | Method summary
summary,FLQuantPoint-method | Method summary
summary,FLQuants-method | Method summary
survprob | Calculating survival probabilties given mortality in the FLBiol object
survprob,FLBiol-method | Calculating survival probabilties given mortality in the FLBiol object
survprob-methods | Calculating survival probabilties given mortality in the FLBiol object
sv2ab | Stock-Recruitment models
sweep,FLArray-method | Sweep out FLQuant Summaries
sweep,FLQuant-method | Sweep out FLQuant Summaries

## -- T --

tagTest | FLtest functions for running simple units tests
transform,FLComp-method | Transform elements of a complex FLR object
trim | Trim FLR objects using named dimensions
trim,FLArray-method | Trim FLR objects using named dimensions
trim,FLCatch-method | Trim FLR objects using named dimensions
trim,FLCohort-method | Trim FLR objects using named dimensions
trim,FLComp-method | Trim FLR objects using named dimensions
trim,FLFleet-method | Trim FLR objects using named dimensions
trim,FLIndex-method | Trim FLR objects using named dimensions
trim,FLMetier-method | Trim FLR objects using named dimensions
trim,FLQuant-method | Trim FLR objects using named dimensions
trim,FLStock-method | Trim FLR objects using named dimensions
trim-methods | Trim FLR objects using named dimensions
type | Accesor and replacement methods for complex S4 classes
type,FLIndex-method | Accesor and replacement methods for complex S4 classes
type-methods | Accesor and replacement methods for complex S4 classes
type<- | Accesor and replacement methods for complex S4 classes
type<-,FLIndex,character-method | Accesor and replacement methods for complex S4 classes
type<--methods | Accesor and replacement methods for complex S4 classes

## -- U --

unitMeans | Methods to compute sums, means and vars of FLQuant objects
unitMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
unitMeans-methods | Methods to compute sums, means and vars of FLQuant objects
units,FLArray-method | units attribute for FLQuant objects
units,FLCohort-method | units attribute for FLQuant objects
units,FLComp-method | units attribute for FLQuant objects
units,FLPar-method | units attribute for FLQuant objects
units<-,FLArray,character-method | units attribute for FLQuant objects
units<-,FLCohort,character-method | units attribute for FLQuant objects
units<-,FLComp,list-method | units attribute for FLQuant objects
units<-,FLPar,character-method | units attribute for FLQuant objects
unitSums | Methods to compute sums, means and vars of FLQuant objects
unitSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
unitSums-methods | Methods to compute sums, means and vars of FLQuant objects
unitVars | Methods to compute sums, means and vars of FLQuant objects
unitVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
unitVars-methods | Methods to compute sums, means and vars of FLQuant objects
update,FLModel-method | Method update
upper | Methods upper and lower
upper,FLModel-method | Methods upper and lower
upper<- | Methods upper and lower
upper<-,FLModel,numeric-method | Methods upper and lower
uppq | Method lowq
uppq,FLQuantPoint-method | Method lowq
uppq-methods | Method lowq
uppq<- | Method lowq
uppq<-,FLQuantPoint-method | Method lowq
uppq<--methods | Method lowq

## -- V --

var,FLPar,missing,missing,missing-method | Variance of an FLPar
var,FLPar-method | Variance of an FLPar
var,FLQuantPoint,missing,missing,missing-method | Method lowq
var,FLQuantPoint-method | Method lowq
var<- | Method lowq
var<-,FLQuantPoint-method | Method lowq
var<--methods | Method lowq
vcost | Accesor and replacement methods for complex S4 classes
vcost,FLFleet-method | Accesor and replacement methods for complex S4 classes
vcost,FLMetier-method | Accesor and replacement methods for complex S4 classes
vcost,FLMetiers-method | Accesor and replacement methods for complex S4 classes
vcost-methods | Accesor and replacement methods for complex S4 classes
vcost<- | Accesor and replacement methods for complex S4 classes
vcost<-,FLMetier,FLQuant-method | Accesor and replacement methods for complex S4 classes
vcost<-,FLMetier,numeric-method | Accesor and replacement methods for complex S4 classes
vcost<--methods | Accesor and replacement methods for complex S4 classes
vcov,ANY-method | Accesor and replacement methods for complex S4 classes
vcov,FLModel-method | Accesor and replacement methods for complex S4 classes
vcov<- | Accesor and replacement methods for complex S4 classes
vcov<-,FLModel,array-method | Accesor and replacement methods for complex S4 classes
vcov<--methods | Accesor and replacement methods for complex S4 classes

## -- W --

window,FLComp-method | Extract time (year) windows of an FLR object
window,FLFleet-method | Extract time (year) windows of an FLR object
window,FLlst-method | Extract time (year) windows of an FLR object
window,FLQuant-method | Extract time (year) windows of an FLR object
writeFLStock | Input/Output of FLR objects
wt | Accesor and replacement methods for complex S4 classes
wt,FLBiol-method | Accesor and replacement methods for complex S4 classes
wt-methods | Accesor and replacement methods for complex S4 classes
wt<- | Accesor and replacement methods for complex S4 classes
wt<-,FLBiol,FLQuant-method | Accesor and replacement methods for complex S4 classes
wt<-,FLBiol,numeric-method | Accesor and replacement methods for complex S4 classes
wt<--methods | Accesor and replacement methods for complex S4 classes

## -- X --

xyplot,formula,FLCohort-method | Lattice plots
xyplot,formula,FLComp-method | Lattice plots
xyplot,formula,FLQuant-method | Lattice plots
xyplot,formula,FLQuants-method | Lattice plots

## -- Y --

yearMeans | Methods to compute sums, means and vars of FLQuant objects
yearMeans,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
yearMeans-methods | Methods to compute sums, means and vars of FLQuant objects
yearSums | Methods to compute sums, means and vars of FLQuant objects
yearSums,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
yearSums-methods | Methods to compute sums, means and vars of FLQuant objects
yearTotals | Method quantTotals
yearTotals,FLQuant-method | Method quantTotals
yearTotals-methods | Method quantTotals
yearVars | Methods to compute sums, means and vars of FLQuant objects
yearVars,FLQuant-method | Methods to compute sums, means and vars of FLQuant objects
yearVars-methods | Methods to compute sums, means and vars of FLQuant objects

## -- misc --

[,FLArray,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLArray,array,ANY-method | Extract or Replace Parts of an FLR Object
[,FLCatch,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLCohort,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLComp,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLFleet,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLFleet,ANY,missing-method | Extract or Replace Parts of an FLR Object
[,FLIndex,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLlst,ANY,missing-method | Extract or Replace Parts of an FLR Object
[,FLMetier,ANY,missing-method | Extract or Replace Parts of an FLR Object
[,FLPar,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[,FLStock,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[<-,FLArray,ANY,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[<-,FLCatch,ANY,ANY,FLCatch-method | Extract or Replace Parts of an FLR Object
[<-,FLComp,ANY,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[<-,FLlst,ANY,missing,ANY-method | Extract or Replace Parts of an FLR Object
[<-,FLPar,ANY,ANY,ANY-method | Extract or Replace Parts of an FLR Object
[<-,FLStock,ANY,ANY,FLStock-method | Extract or Replace Parts of an FLR Object
[[,FLFleet,ANY,missing-method | Extract or Replace Parts of an FLR Object
[[,FLMetier,ANY,missing-method | Extract or Replace Parts of an FLR Object
[[<-,FLlst,ANY,missing-method | Extract or Replace Parts of an FLR Object